PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0584s00020.1
Common NameLR48_Vigan226s001800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 365aa    MW: 40325.8 Da    PI: 6.8743
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0584s00020.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-174594255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Vang0584s00020.1 45 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 94
                      59*******.**********93....35999**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.08945102IPR001471AP2/ERF domain
SMARTSM003805.4E-3345108IPR001471AP2/ERF domain
CDDcd000184.57E-3045101No hitNo description
PfamPF008479.1E-114594IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2945101IPR001471AP2/ERF domain
SuperFamilySSF541714.38E-2145102IPR016177DNA-binding domain
PRINTSPR003672.0E-94657IPR001471AP2/ERF domain
PRINTSPR003672.0E-96884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEEALRRLNG VTPTQEPDVV SDPHPKKCVA KRTLRDTANS GTAMRYRGVR RRPWGRYAAE  60
IRDPQSKERR WLGTFDTAEE AACAYDCAAR AMRGVKARTN FVYPDAADPH LFHPFNLPKH  120
CHVSRFPHNT NLGSDFPASS HNSSSSSTSS LNMLLFRDFL NSSSNPCLLS SASSQQFHDS  180
KSASYVNPSS STLSPTATNY LPGCCVGNAD NYQNTVSANH GVEVADVIDE DSDFFPRESS  240
DSGLLEEIVH KFLPKSKPKV ETSTLSQSLP EVPQQIFDHV VVSASKGYGD SRMRVPKVEG  300
FGVCHDAPMQ QFEALSGFNA MHGMTSIQRD NQLMLNHIPG FSSIEDYLQY SELFNSFATR  360
MQNA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1846101359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014523968.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A0S3R2310.0A0A0S3R231_PHAAN; Uncharacterized protein
TrEMBLA0A0L9T7K90.0A0A0L9T7K9_PHAAN; Uncharacterized protein
STRINGGLYMA18G20962.11e-138(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.12e-15DORNROSCHEN-like
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]